LOCUS       Chrom1                 10264 bp    DNA              UNK 01-JAN-1980
DEFINITION  Chrom1 [topology=circular] [organism=Ligilactobacillus_murinus].
ACCESSION   Chrom1
VERSION     Chrom1
KEYWORDS    .
SOURCE      .
  ORGANISM  .
            .
COMMENT     ##antiSMASH-Data-START##
            Version     :: 8.0.4
            Run date    :: 2025-11-03 12:46:08
            NOTE :: This is a single region extracted from a larger record!
            Orig. start :: 2268075
            Orig. end   :: 2278339
            ##antiSMASH-Data-END##
FEATURES             Location/Qualifiers
     region          1..10264
                     /candidate_cluster_numbers="1"
                     /contig_edge="False"
                     /product="RiPP-like"
                     /region_number="16"
                     /rules="(strepbact or Antimicrobial14 or Bacteriocin_IId or
                     BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or
                     Lactococcin or Antimicrobial17 or Lactococcin_972 or
                     Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or
                     TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or
                     TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))"
                     /tool="antismash"
     cand_cluster    1..10264
                     /candidate_cluster_number="1"
                     /contig_edge="False"
                     /detection_rules="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or
                     TIGR03604))"
                     /kind="single"
                     /product="RiPP-like"
                     /protoclusters="1"
                     /tool="antismash"
     protocluster    1..10264
                     /aStool="rule-based-clusters"
                     /category="RiPP"
                     /contig_edge="False"
                     /core_location="[5000:5264](-)"
                     /cutoff="20000"
                     /detection_rule="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or
                     TIGR03604))"
                     /neighbourhood="5000"
                     /product="RiPP-like"
                     /protocluster_number="1"
                     /tool="antismash"
     proto_core      complement(5001..5264)
                     /aStool="rule-based-clusters"
                     /tool="antismash"
                     /cutoff="20000"
                     /detection_rule="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or
                     TIGR03604))"
                     /neighbourhood="5000"
                     /product="RiPP-like"
                     /protocluster_number="1"
     CDS             complement(98..529)
                     /locus_tag="ctg1_2203"
                     /transl_table=11
                     /translation="MKSKVEIDPKLPEEWAEFHVHELTPKLQQVVQLLEHDEQIWGYAD
                     QIVKPLALAQIISLNSQAGKIYAMTEHGSYQVKKKLYEVAELLSPDFVKISRSEFVNLN
                     YLDHLELTAQGTIALKLKNGTTTFVARRCVKNLKERLGI"
     PFAM_domain     complement(107..382)
                     /aSDomain="LytTR"
                     /aSTool="clusterhmmer"
                     /database="35.0"
                     /db_xref="PF04397.18"
                     /db_xref="GO:0003677"
                     /description="LytTr DNA-binding domain"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_2203_0462"
                     /evalue="7.30E-18"
                     /gene_ontologies="GO:0003677: DNA binding"
                     /label="ctg1_2203"
                     /locus_tag="ctg1_2203"
                     /protein_end="141"
                     /protein_start="49"
                     /score="64.7"
                     /tool="antismash"
                     /translation="PLALAQIISLNSQAGKIYAMTEHGSYQVKKKLYEVAELLSPDFVK
                     ISRSEFVNLNYLDHLELTAQGTIALKLKNGTTTFVARRCVKNLKERL"
     misc_feature    560..580
                     /note="TFBS match to MntR, Manganese transport regulator,
                     confidence: weak, score: 25.59"
                     /tool="antismash"
     CDS             complement(794..1057)
                     /locus_tag="ctg1_2204"
                     /transl_table=11
                     /translation="MVEKLKQYPVTALTVVAMVLIALLLGELAWFRKLAVVLLTWWVGV
                     GFERPVNEMIAQEKLGKLVGKGFVLVATVAFAAVVTYVQIRF"
     CDS             complement(1069..1446)
                     /locus_tag="ctg1_2205"
                     /transl_table=11
                     /translation="MFIHHIAIICSDRAQAVDFYVDKLGFEIISEHVRPKKDDILLNVA
                     KDGLVLELFIKPNARKRVSGATGEARGLRHLAFKCDDVAAKREQLLALGIKCEPLRRDD
                     FDGKLMTFFFDPDGLPLELHE"
     PFAM_domain     complement(1078..1440)
                     /aSDomain="Glyoxalase"
                     /aSTool="clusterhmmer"
                     /database="35.0"
                     /db_xref="PF00903.28"
                     /description="Glyoxalase/Bleomycin resistance
                     protein/Dioxygenase superfamily"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_2205_0463"
                     /evalue="4.60E-16"
                     /label="ctg1_2205"
                     /locus_tag="ctg1_2205"
                     /protein_end="123"
                     /protein_start="2"
                     /score="59.3"
                     /tool="antismash"
                     /translation="IHHIAIICSDRAQAVDFYVDKLGFEIISEHVRPKKDDILLNVAKD
                     GLVLELFIKPNARKRVSGATGEARGLRHLAFKCDDVAAKREQLLALGIKCEPLRRDDFD
                     GKLMTFFFDPDGLPLEL"
     CDS             complement(1446..1880)
                     /locus_tag="ctg1_2206"
                     /transl_table=11
                     /translation="MKEAKHKMHKPHFIHDIRIGIGDMCKITGVTGRQLRYWEERGYIK
                     SLADEKNSARKYSWEMLYKVGSIKAFIDEGYTLAKAVEKSELREKEMAIIRKFMATNMH
                     RVKITDEELLYGQIDLGKCEGKKIYGVVDEAGSHLEFGEE"
     PFAM_domain     complement(1638..1820)
                     /aSDomain="MerR_1"
                     /aSTool="clusterhmmer"
                     /database="35.0"
                     /db_xref="PF13411.9"
                     /db_xref="GO:0003677"
                     /db_xref="GO:0006355"
                     /description="MerR HTH family regulatory protein"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_2206_0464"
                     /evalue="4.20E-11"
                     /gene_ontologies="GO:0003677: DNA binding"
                     /gene_ontologies="GO:0006355: regulation of DNA-templated
                     transcription"
                     /label="ctg1_2206"
                     /locus_tag="ctg1_2206"
                     /protein_end="81"
                     /protein_start="20"
                     /score="42.9"
                     /tool="antismash"
                     /translation="IGDMCKITGVTGRQLRYWEERGYIKSLADEKNSARKYSWEMLYKV
                     GSIKAFIDEGYTLAKA"
     CDS             2034..3521
                     /gene_functions="transport (smcogs) SMCOG1005: Drug
                     resistance transporter, EmrB/QacA"
                     /gene_kind="transport"
                     /locus_tag="ctg1_2207"
                     /transl_table=11
                     /translation="MNNATRPTDINGNGYNRDLLVLVLMVGSFCTFLNSTLMNTAFPAI
                     MKDFSISTATVQWLTTGFMMVNGVMIPISAWLINRFSSKTMYLWAMLTFLLGTVVSFTA
                     QNFGVLLAGRLIQGIGVGVSMPLLQTIMLSIFPPEKRGAAMGTVGLVIGLAPALGPTLS
                     GWIVDNWTWRELFGMIIPIVVAVIILAFFFMKSVVPNTHQKIDVISIITSTIGFGALLY
                     GFSKAGNDGWGDLYVLVYLAVGAVFVALFCLRQLKMDEPFLDITVFKYGEFSLAAILSG
                     VANLALVGSEMVIPLYIQNIRGESAFHSGLILLPGALAMGIMSPITGRLFDRYGAKFMA
                     LAGMTMLTLGSIPFLFITKETSIMLIIVFYAIRMFGISATMMPVTTSGMNVLPFNKISH
                     GTAVNNTFRQVLSSIGTAILISVLSSVTKNSMPAHNVLVQTPIKYADLATGAVLNGYHA
                     AFFISILFAVVALCFAFFLKKGNNAPKVTLTSKKGAK"
     aSDomain        2091..3317
                     /aSDomain="TIGR00711"
                     /aSTool="tigrfam"
                     /description="efflux_EmrB: drug resistance MFS transporter,
                     drug:H+ antiporter-2 (14 Spanner) (DHA2) family"
                     /detection="hmmscan"
                     /domain_id="TIGRFam_ctg1_2207_0124"
                     /evalue="1.90E-110"
                     /identifier="TIGR00711"
                     /label="ctg1_2207"
                     /locus_tag="ctg1_2207"
                     /protein_end="428"
                     /protein_start="19"
                     /score="367.8"
                     /tool="antismash"
                     /translation="LVLVLMVGSFCTFLNSTLMNTAFPAIMKDFSISTATVQWLTTGFM
                     MVNGVMIPISAWLINRFSSKTMYLWAMLTFLLGTVVSFTAQNFGVLLAGRLIQGIGVGV
                     SMPLLQTIMLSIFPPEKRGAAMGTVGLVIGLAPALGPTLSGWIVDNWTWRELFGMIIPI
                     VVAVIILAFFFMKSVVPNTHQKIDVISIITSTIGFGALLYGFSKAGNDGWGDLYVLVYL
                     AVGAVFVALFCLRQLKMDEPFLDITVFKYGEFSLAAILSGVANLALVGSEMVIPLYIQN
                     IRGESAFHSGLILLPGALAMGIMSPITGRLFDRYGAKFMALAGMTMLTLGSIPFLFITK
                     ETSIMLIIVFYAIRMFGISATMMPVTTSGMNVLPFNKISHGTAVNNTFRQVLSSIGTAI
                     LISVLSSVTK"
     PFAM_domain     2103..3278
                     /aSDomain="MFS_1"
                     /aSTool="clusterhmmer"
                     /database="35.0"
                     /db_xref="PF07690.19"
                     /db_xref="GO:0022857"
                     /db_xref="GO:0055085"
                     /description="Major Facilitator Superfamily"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_2207_0465"
                     /evalue="2.10E-51"
                     /gene_ontologies="GO:0022857: transmembrane transporter
                     activity"
                     /gene_ontologies="GO:0055085: transmembrane transport"
                     /label="ctg1_2207"
                     /locus_tag="ctg1_2207"
                     /protein_end="415"
                     /protein_start="23"
                     /score="175.1"
                     /tool="antismash"
                     /translation="LMVGSFCTFLNSTLMNTAFPAIMKDFSISTATVQWLTTGFMMVNG
                     VMIPISAWLINRFSSKTMYLWAMLTFLLGTVVSFTAQNFGVLLAGRLIQGIGVGVSMPL
                     LQTIMLSIFPPEKRGAAMGTVGLVIGLAPALGPTLSGWIVDNWTWRELFGMIIPIVVAV
                     IILAFFFMKSVVPNTHQKIDVISIITSTIGFGALLYGFSKAGNDGWGDLYVLVYLAVGA
                     VFVALFCLRQLKMDEPFLDITVFKYGEFSLAAILSGVANLALVGSEMVIPLYIQNIRGE
                     SAFHSGLILLPGALAMGIMSPITGRLFDRYGAKFMALAGMTMLTLGSIPFLFITKETSI
                     MLIIVFYAIRMFGISATMMPVTTSGMNVLPFNKISHGTAVNNTFRQVLSSIG"
     CDS             3522..4235
                     /locus_tag="ctg1_2208"
                     /transl_table=11
                     /translation="MSIIILVLATISFFCFTVLPTLKHHVLYALLSFAIMVLCTGAIVL
                     NDSYNFGMKVQTITQKQKLVSSVPDQLDVLLYQPLGTKSERVYLYHNSSDEKKLRQTKT
                     TDTTTKYSQTGKTPQLVVTKERYVYQNGLSELFFGILGNNDRLKHQTYEFKLTDNWFVL
                     STKQAKQLKKLLKEHDTELKQNISQVIQQELAQKLQQNPTMSSSEREKLVKELQKQATQ
                     QLVKKLITQVQASDS"
     PFAM_domain     3591..4034
                     /aSDomain="DUF4811"
                     /aSTool="clusterhmmer"
                     /database="35.0"
                     /db_xref="PF16069.8"
                     /description="Domain of unknown function (DUF4811)"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_2208_0466"
                     /evalue="7.00E-43"
                     /label="ctg1_2208"
                     /locus_tag="ctg1_2208"
                     /protein_end="171"
                     /protein_start="23"
                     /score="146.3"
                     /tool="antismash"
                     /translation="HHVLYALLSFAIMVLCTGAIVLNDSYNFGMKVQTITQKQKLVSSV
                     PDQLDVLLYQPLGTKSERVYLYHNSSDEKKLRQTKTTDTTTKYSQTGKTPQLVVTKERY
                     VYQNGLSELFFGILGNNDRLKHQTYEFKLTDNWFVLSTKQAKQL"
     CDS             4332..4580
                     /locus_tag="ctg1_2209"
                     /transl_table=11
                     /translation="MDKQTNIVSAQVVDVKSNKITLKTEDDEVIEVARPKSAAHDMLFI
                     QTMKDILKSGIWIPVNKKLKQLLRYDWFETPVEQYSF"
     misc_feature    4359..4373
                     /note="TFBS match to NrdR, Represses ribonucleotide
                     reductase encoding genes, confidence: weak, score: 20.75"
                     /tool="antismash"
     CDS             complement(5001..5264)
                     /gene_functions="biosynthetic (rule-based-clusters)
                     RiPP-like: Bacteriocin_II"
                     /gene_kind="biosynthetic"
                     /locus_tag="ctg1_2210"
                     /sec_met_domain="Bacteriocin_II (E-value: 2.6e-12,
                     bitscore: 43.4, seeds: 19, tool: rule-based-clusters)"
                     /transl_table=11
                     /translation="MRKILICLVTVLSLVFVFGLHNTASASVSANVPVTGGSSADPYKY
                     YGNGLYCNQLGCKVDWSRTWYCGVNNAAAGYATGGKAGIENC"
     PFAM_domain     complement(5031..5135)
                     /aSDomain="Bacteriocin_II"
                     /aSTool="clusterhmmer"
                     /database="35.0"
                     /db_xref="PF01721.21"
                     /db_xref="GO:0005576"
                     /db_xref="GO:0042742"
                     /description="Class II bacteriocin"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_2210_0467"
                     /evalue="6.00E-11"
                     /gene_ontologies="GO:0005576: extracellular region"
                     /gene_ontologies="GO:0042742: defense response to
                     bacterium"
                     /label="ctg1_2210"
                     /locus_tag="ctg1_2210"
                     /protein_end="78"
                     /protein_start="43"
                     /score="42.3"
                     /tool="antismash"
                     /translation="KYYGNGLYCNQLGCKVDWSRTWYCGVNNAAAGYAT"
     CDS             complement(5433..5681)
                     /locus_tag="ctg1_2211"
                     /transl_table=11
                     /translation="MLISFPPSKAPASAIKALKGRSAYIFLQNHPEIRRSQYWGGHLWS
                     PSYYMSTLGNMSKEVVEKYINDQKYTETNKKPHKGAQ"
     PFAM_domain     complement(5478..5681)
                     /aSDomain="Y1_Tnp"
                     /aSTool="clusterhmmer"
                     /database="35.0"
                     /db_xref="PF01797.19"
                     /db_xref="GO:0003677"
                     /db_xref="GO:0004803"
                     /db_xref="GO:0006313"
                     /description="Transposase IS200 like"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_2211_0468"
                     /evalue="3.80E-16"
                     /gene_ontologies="GO:0003677: DNA binding"
                     /gene_ontologies="GO:0004803: transposase activity"
                     /gene_ontologies="GO:0006313: DNA transposition"
                     /label="ctg1_2211"
                     /locus_tag="ctg1_2211"
                     /protein_end="68"
                     /protein_start="0"
                     /score="59.4"
                     /tool="antismash"
                     /translation="MLISFPPSKAPASAIKALKGRSAYIFLQNHPEIRRSQYWGGHLWS
                     PSYYMSTLGNMSKEVVEKYINDQ"
     CDS             complement(5745..5888)
                     /locus_tag="ctg1_2212"
                     /transl_table=11
                     /translation="MTKEKIKEAIYTRRYIYNFHYHLIWVTKYRNQTFTTEALSNEMKA
                     IL"
     PFAM_domain     complement(5751..5843)
                     /aSDomain="Y1_Tnp"
                     /aSTool="clusterhmmer"
                     /database="35.0"
                     /db_xref="PF01797.19"
                     /db_xref="GO:0003677"
                     /db_xref="GO:0004803"
                     /db_xref="GO:0006313"
                     /description="Transposase IS200 like"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_2212_0469"
                     /evalue="2.10E-05"
                     /gene_ontologies="GO:0003677: DNA binding"
                     /gene_ontologies="GO:0004803: transposase activity"
                     /gene_ontologies="GO:0006313: DNA transposition"
                     /label="ctg1_2212"
                     /locus_tag="ctg1_2212"
                     /protein_end="46"
                     /protein_start="15"
                     /score="24.7"
                     /tool="antismash"
                     /translation="IYNFHYHLIWVTKYRNQTFTTEALSNEMKAI"
     CDS             5962..7212
                     /gene_functions="other (smcogs) SMCOG1192: transposase"
                     /gene_kind="other"
                     /locus_tag="ctg1_2213"
                     /transl_table=11
                     /translation="MKSMAKMKYHYGLKMRCYPSDQQKQLIKINSDASRFIYNEMVAIN
                     KELMQLRRVKLPIDIVRDRIKQLTMRQNAKQMSNHYQFLEDKRIDSLTKANAIQNYRKA
                     WNAFRKVHTAGVPKFHRKNYRWRYQTNCQYPGQKTALLTNGTVCFLDNSHVKVPKIGLL
                     RVAGSQARLLKRICETRIGTVTLTKDSADRFFLSMQLASDESFVKVAKATHGHVGIDLN
                     TDNFLTDSGGNIVPNPRYYRTIKGKLAKEQRILSRRQQRAKKEHRSLRDSKNYQKQRLL
                     VAKLHAKVMNQRHNFLQQISTALIKNHDLVVAEELRSKNMLKNHALALSISDVGWRTFL
                     GMLAYKAKLYGRQFITINPRNTTQTCCDCGFVMGTNGTDKLTLDDRKWTCPNCGIHHIR
                     DWNAAKNILDKGIAKLA"
     PFAM_domain     5995..6111
                     /aSDomain="HTH_OrfB_IS605"
                     /aSTool="clusterhmmer"
                     /database="35.0"
                     /db_xref="PF12323.11"
                     /description="Helix-turn-helix domain"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_2213_0470"
                     /evalue="1.00E-06"
                     /label="ctg1_2213"
                     /locus_tag="ctg1_2213"
                     /protein_end="50"
                     /protein_start="11"
                     /score="28.3"
                     /tool="antismash"
                     /translation="GLKMRCYPSDQQKQLIKINSDASRFIYNEMVAINKELMQ"
     PFAM_domain     6598..6927
                     /aSDomain="OrfB_IS605"
                     /aSTool="clusterhmmer"
                     /database="35.0"
                     /db_xref="PF01385.22"
                     /description="Probable transposase"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_2213_0471"
                     /evalue="2.20E-17"
                     /label="ctg1_2213"
                     /locus_tag="ctg1_2213"
                     /protein_end="322"
                     /protein_start="212"
                     /score="63.5"
                     /tool="antismash"
                     /translation="THGHVGIDLNTDNFLTDSGGNIVPNPRYYRTIKGKLAKEQRILSR
                     RQQRAKKEHRSLRDSKNYQKQRLLVAKLHAKVMNQRHNFLQQISTALIKNHDLVVAEEL
                     RSKNML"
     aSDomain        6832..7047
                     /aSDomain="TIGR01766"
                     /aSTool="tigrfam"
                     /description="tspaseT_teng_C: transposase, IS605 OrfB
                     family"
                     /detection="hmmscan"
                     /domain_id="TIGRFam_ctg1_2213_0125"
                     /evalue="9.10E-10"
                     /identifier="TIGR01766"
                     /label="ctg1_2213"
                     /locus_tag="ctg1_2213"
                     /protein_end="362"
                     /protein_start="290"
                     /score="36.9"
                     /tool="antismash"
                     /translation="NQRHNFLQQISTALIKNHDLVVAEELRSKNMLKNHALALSISDVG
                     WRTFLGMLAYKAKLYGRQFITINPRNT"
     PFAM_domain     6967..7191
                     /aSDomain="OrfB_Zn_ribbon"
                     /aSTool="clusterhmmer"
                     /database="35.0"
                     /db_xref="PF07282.14"
                     /description="Putative transposase DNA-binding domain"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_2213_0472"
                     /evalue="2.50E-21"
                     /label="ctg1_2213"
                     /locus_tag="ctg1_2213"
                     /protein_end="410"
                     /protein_start="335"
                     /score="75.5"
                     /tool="antismash"
                     /translation="WRTFLGMLAYKAKLYGRQFITINPRNTTQTCCDCGFVMGTNGTDK
                     LTLDDRKWTCPNCGIHHIRDWNAAKNILDK"
     CDS             complement(7686..8129)
                     /locus_tag="ctg1_2214"
                     /transl_table=11
                     /translation="MLKQVLARPAVYKKILLGYWIGSSVILFGYLSLVALDLGKSLPAT
                     LQTMPSLALVTIIAGLNLLLAAALWKIQATDRPLFLSLALVQQLLSLNFVGALLIYFYQ
                     RFSQQKFLQKPTTDQGALLLSFTLVILLTLFVLLIRLRLEFIN"
     misc_feature    8123..8138
                     /note="TFBS match to ColR, Phenol-responsive regulator,
                     confidence: medium, score: 25.19"
                     /tool="antismash"
     CDS             complement(8135..8890)
                     /locus_tag="ctg1_2215"
                     /transl_table=11
                     /translation="MTLEELITKHQKALGDLDKTILRYVLDNKQEVQQLGITELATATY
                     TSKSTVLRLVRKLGFAGFSEFKYFLKTSTKEVKPATEMFADLQVSDIIKTIKGLEHVEW
                     DDLTLRLKEAQTIYCYGTGFSQRRILDEFAKNLLQLGKRAITIPNKTELDMAMEMITTH
                     DVVLLASLSGETESIKENIFMWTLKNVPLVSVTQAKENTFASHSDYALHYHVTPFSVIK
                     EKKVESLVTLSVVVDYLFRKLTEKMSKDR"
     PFAM_domain     complement(8237..8560)
                     /aSDomain="SIS"
                     /aSTool="clusterhmmer"
                     /database="35.0"
                     /db_xref="PF01380.25"
                     /db_xref="GO:0097367"
                     /db_xref="GO:1901135"
                     /description="SIS domain"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_2215_0474"
                     /evalue="5.00E-12"
                     /gene_ontologies="GO:0097367: carbohydrate derivative
                     binding"
                     /gene_ontologies="GO:1901135: carbohydrate derivative
                     metabolic process"
                     /label="ctg1_2215"
                     /locus_tag="ctg1_2215"
                     /protein_end="218"
                     /protein_start="110"
                     /score="45.9"
                     /tool="antismash"
                     /translation="LKEAQTIYCYGTGFSQRRILDEFAKNLLQLGKRAITIPNKTELDM
                     AMEMITTHDVVLLASLSGETESIKENIFMWTLKNVPLVSVTQAKENTFASHSDYALHYH
                     VTPF"
     PFAM_domain     complement(8672..8890)
                     /aSDomain="HTH_6"
                     /aSTool="clusterhmmer"
                     /database="35.0"
                     /db_xref="PF01418.20"
                     /db_xref="GO:0003700"
                     /db_xref="GO:0006355"
                     /description="Helix-turn-helix domain, rpiR family"
                     /detection="hmmscan"
                     /domain_id="clusterhmmer_ctg1_2215_0473"
                     /evalue="3.10E-17"
                     /gene_ontologies="GO:0003700: DNA-binding transcription
                     factor activity"
                     /gene_ontologies="GO:0006355: regulation of DNA-templated
                     transcription"
                     /label="ctg1_2215"
                     /locus_tag="ctg1_2215"
                     /protein_end="73"
                     /protein_start="0"
                     /score="62.5"
                     /tool="antismash"
                     /translation="MTLEELITKHQKALGDLDKTILRYVLDNKQEVQQLGITELATATY
                     TSKSTVLRLVRKLGFAGFSEFKYFLKTS"
     misc_feature    complement(10126..10139)
                     /note="TFBS match to MogR, Repressor of flagellar motility
                     genes, confidence: medium, score: 23.09"
                     /tool="antismash"
ORIGIN
        1 tccttgtcca aaaatactag aaaaaatgac agataagatc actccgatcg cgatccccga
       61 acaactagca ctaattatct ttttaaatat tttcatttta tatccctagc ctttctttga
      121 gatttttgac acaacgccta gctacaaagg tcgtagtacc attttttagt tttaaagcga
      181 tcgttccttg cgcggtcaat tccaaatgat ctaaataatt caagttaaca aattcactac
      241 gactgatctt aacaaaatct ggggataaaa gttcagccac ttcatataat ttcttcttta
      301 cctgatagct accgtgctcg gtcatagcat agatcttacc agcttggcta tttaaggaaa
      361 ttatctgagc taaagctaac ggcttaacga tctgatcggc atagccccaa atttgttcat
      421 cgtgttcaag tagttggacg acttgttgta acttaggtgt caattcatgc acatgaaatt
      481 cggcccattc ttcaggtaat ttcggatcga tctcaacttt acttttcatt ttggcatccc
      541 cctttcttta actaaattct agcaaatctt aggctaaatt tcgctaaaga cgcctaaacg
      601 gtcaggactg acaggcaaac ggtctaaaag ctagctcaag cgggtctaaa aggtcgtaat
      661 gtgatagtta tgtagtagaa acgtgtttta cagcacacct agctgataac gagagatccc
      721 ccatgttgca aaatacgcat catgggggat ctctcgttat ctgtacggaa ctacccgtgc
      781 tgtttcacac gctttaaaat cttatttgaa cataggtcac tacggctgca aaagctactg
      841 tcgctaccaa aacaaagccc ttgcctacga gctttcctaa tttttcttgg gcgatcatct
      901 cattgacggg cctttcaaag ccaactccga cccaccaagt caataagacc accgctaatt
      961 tcctaaacca agccagctca cctaacaaca aagctatcag caccattgct actacagtaa
     1021 gcgctgtgac tggatattgc tttaattttt ctaccattat gtctccttct attcatgtaa
     1081 ttcaaggggc aagccgtcag ggtcaaagaa aaaggtcatc aacttaccat cgaagtcatc
     1141 acgccgcaac ggctcacatt tgatacctaa cgccaacaat tgctctcttt tggctgcaac
     1201 atcgtcacat ttaaaggcca aatgccgtaa accccgtgcc tcacccgtag caccactgac
     1261 acgttttcgg gcattgggct tgatgaacaa ctccaagact agcccatctt tagctacatt
     1321 caacaaaata tcgtcttttt tgggacggac atgttcagat atgatctcaa accccaattt
     1381 atcaacataa aaatcaactg cttgtgcacg atcgctacaa atgatcgcaa tatgatggat
     1441 aaacattact cttcaccaaa ttccaaatga ctgccagctt catcaacaac accgtagatc
     1501 tttttacctt cacattttcc taagtcaatt tgcccgtaga gtagctcttc atctgtgatc
     1561 ttcactctat gcatattggt agccataaat ttacggatga tcgccatttc tttttcgcgt
     1621 aattcagatt tttcaacagc tttagctaag gtatagccct catcaataaa agctttgatc
     1681 gaaccaactt tatacagcat ttcccagcta tacttacgcg cggaattctt ttcatcggct
     1741 agcgacttga tataaccccg ctcttcccaa tagcgcaatt ggcgccctgt aactccagtg
     1801 atcttgcaca tgtcaccgat cccgatccga atatcatgga taaagtgggg tttgtgcatc
     1861 ttatgcttcg cttctttcaa ggttcttccc cctcgcaaat agtttctcac tttagatttt
     1921 atattgtttg ggcgatttgt caactatctt gacaaacttg gtaaataagg tttatagtag
     1981 gcaacgcaca taaattgaaa ataatatcta aaatactaaa ggagtgaact tgcttgaata
     2041 atgctacgcg tccgaccgac atcaatggca atggttataa tcgtgatcta ttggtcttag
     2101 ttctaatggt cggttctttt tgtacttttt tgaatagtac cttgatgaat actgcttttc
     2161 ctgcgatcat gaaagatttt tcgatctcaa cagcaaccgt tcaatggtta acgactggtt
     2221 ttatgatggt caatggggta atgatcccga tctcagcttg gttgatcaat cgtttcagct
     2281 caaaaacgat gtatctctgg gctatgttga cctttttact agggacagtc gtttctttta
     2341 ccgcccaaaa tttcggcgtc cttctcgcag gtcggttgat ccaaggtatc ggggtcggcg
     2401 tctcaatgcc gttacttcaa acgatcatgc tctcgatctt tcctccagaa aaacggggcg
     2461 ctgccatggg gacagtcggg ctagtgatcg ggcttgcacc agctttgggg ccaacacttt
     2521 ccggctggat cgtcgataac tggacttggc gtgaattatt tggcatgatc attccgatcg
     2581 tggtcgccgt tatcatctta gcctttttct tcatgaaaag cgttgtgcct aacacccacc
     2641 aaaagatcga cgttatttcg atcatcacct caacgatcgg atttggggcg ttattatatg
     2701 gtttttctaa agctggtaat gatggctggg gcgatcttta tgtcctcgtc tatctagctg
     2761 tcggggcagt ctttgttgct ctcttttgtt tacgccaatt aaaaatggac gaacctttct
     2821 tagatatcac ggtctttaaa tatggtgaat ttagcttagc tgcgatctta agtggggtgg
     2881 ctaacttagc tttggttggt tctgaaatgg tgatcccact ttacattcaa aacattcgcg
     2941 gggaatccgc cttccattcc ggcttgatct tactccctgg tgccttggcc atggggatca
     3001 tgtcaccgat cacagggcgc ttgtttgacc gttacggggc taaatttatg gcgcttgctg
     3061 ggatgacgat gttgacttta ggctcgatcc cctttctttt tatcactaaa gagacttcga
     3121 tcatgttgat catcgtcttt tatgcgatcc ggatgtttgg gatctcggcg acgatgatgc
     3181 cggtcacgac ttctgggatg aacgtcttgc ccttcaacaa gatctctcac ggaacagcgg
     3241 tcaacaacac tttccgccaa gtcttaagct cgatcgggac cgcgatcttg atctccgtct
     3301 tgagttcagt taccaaaaac tcaatgcctg ctcacaatgt tttggtccaa acgccgatca
     3361 aatatgctga tcttgcaaca ggagctgttt tgaatggtta tcatgctgca ttctttatct
     3421 cgatcctctt tgcagtcgtc gcattgtgct ttgctttctt cttaaagaag ggcaataatg
     3481 cacctaaagt cacactcact agtaaaaagg gggctaagta gatgagtatc attattttag
     3541 ttttagcaac gatcagcttc ttttgtttta cagtcctgcc tacccttaaa caccacgttt
     3601 tatatgcttt actatcattt gcgatcatgg tgctttgtac tggtgcgatc gttttgaatg
     3661 attcctataa ttttgggatg aaagttcaaa cgatcaccca aaaacaaaaa ctcgtttctt
     3721 cggttcctga tcaactcgat gtcttattgt atcaaccact tggaactaag tcagaaagag
     3781 tctatctcta tcacaattct tctgatgaga agaaattgcg ccaaacaaaa acgactgata
     3841 cgactaccaa atactcgcaa actggcaaaa ctccacaatt agtcgtgaca aaagagcgtt
     3901 atgtctacca aaatggcctt tctgagcttt tctttggtat cttaggcaat aatgatcgtc
     3961 tcaaacatca aacttatgag ttcaaattga ccgataattg gtttgttttg agtactaagc
     4021 aagctaaaca gctaaaaaaa ttacttaaag aacatgatac cgaactcaag caaaacatct
     4081 cccaggtcat ccaacaagaa ttagctcaga aattgcaaca aaatccaacg atgtctagct
     4141 cagaacgcga gaaattggtc aaagagttac aaaaacaagc gacccaacag ttagtcaaaa
     4201 aattgatcac tcaagttcaa gcaagtgatt cttaaactaa atctaaggca tatttataaa
     4261 caaatttaaa caactagcgt atagtagaga ctgtatcaag ttaagatacc cgtccagaaa
     4321 ggaacatcta tatggataaa caaactaata ttgtctctgc acaagttgta gacgtaaaat
     4381 caaacaagat cactttaaaa actgaagacg atgaagttat cgaagtggca cgccctaaaa
     4441 gcgcagccca tgatatgctc ttcatccaaa caatgaaaga catcttaaag agtgggatct
     4501 ggatcccggt aaataaaaaa ctcaaacaac ttttacgtta cgactggttt gaaactccag
     4561 tcgaacaata ctcattttaa tataaaaaac gggctgaaaa tcgcgtttaa aacgttgatc
     4621 ttcaacccgt ttttttgtat gagtttttcc tagtttctaa tttttatgct caaatttttg
     4681 gggatcgatt ttttatcttc caagccaagt gttagtggtc ataaggtcgt tgattttagt
     4741 ccaaatacta cctgaatttg atattttttt tagttgatat aaaagttcct ttgtttcttt
     4801 agatagagac tttttttcaa ttaaatttaa cgtaaaaaag ttttgatata caacatttac
     4861 ttccgtacga atagtatagt tattcttaat tttctcgctg gctatatcaa tgaaattaag
     4921 atcagaattg gaaaatccat ctgcttctaa actatatttg aaagatttta acaataaaag
     4981 tacatcatct ttttttacag ttaacaattt tcaatacccg ctttcccacc agttgcatag
     5041 ccagctgctg cattatttac tccacaatac catgttctag accaatcgac tttacagcct
     5101 aattgattac aataaagccc attaccataa tatttatatg gatcagcaga acttcctcca
     5161 gtcacaggaa catttgccga aacactagcc gaagcagtgt tatgaagccc aaatacaaaa
     5221 acgagagata atactgtcac caaacaaatt aatatttttc tcatgatgca actccttttt
     5281 gtaattcaac tgacaactac tacaactatt aaacctactt tgttcaaatt ttaccacact
     5341 aataaaccaa tgtaaattta atgaaagtgg tcctaatcac ttttaatgac gcctatccat
     5401 cccgtgactt tagtcatggg atggataggc cactattgag cccctttatg gggctttttg
     5461 tttgtttctg tatatttttg gtcattgata tatttctcta caacttcttt gctcatattg
     5521 cccaatgtac tcatatagta acttggcgac caaagatgac cgccccaata ttggctacgt
     5581 cgtatttctg gatgattttg taaaaaaata taggcactac gtcctttgag cgccttaatg
     5641 gcactagccg gcgctttgct tggcggaaaa ctgatcagca tatgaatgtg atccggcatg
     5701 acttccatct tttcgattac gatgtcattg ttatctgcaa cttgctacaa gatagctttc
     5761 atttcgttag ataaggcctc ggttgtaaaa gtctgattgc gatatttagt tacccagatc
     5821 aaatggtaat ggaaattata gatataacga cgagtataaa tggcctcttt gattttttct
     5881 ttagtcataa tatggtctcc tttgttaata cattgacatc atgatataat gttattatat
     5941 caataaggga ggtgaaatca aatgaaatca atggcaaaaa tgaaatatca ttatggccta
     6001 aaaatgcgct gctatcctag tgaccaacaa aagcagttga ttaaaatcaa cagtgacgct
     6061 agtcgcttta tctataacga aatggttgca atcaataagg aactgatgca gcttcgcaga
     6121 gttaagctac cgattgacat agttcgggat cgtattaagc aactaactat gcgccaaaac
     6181 gctaagcaaa tgtctaatca ctatcaattc ttagaagata aacgaattga tagtttgacg
     6241 aaagctaatg ccattcagaa ctatcggaaa gcttggaatg cttttcggaa ggttcacacc
     6301 gctggtgttc ctaagtttca tcgaaagaat tatcgctggc gttatcaaac caattgtcaa
     6361 tacccagggc aaaagactgc gttgctaact aacggtacag tctgttttct agataatagc
     6421 catgtcaaag tccctaaaat cggactgtta cgtgttgccg gttcgcaagc acggcttttg
     6481 aaaagaatat gcgagactag aattggtact gtgacgttga ctaaagattc agcggatcgc
     6541 ttcttcttat caatgcagtt agcttcagat gaatcttttg ttaaagtggc caaagctact
     6601 catgggcatg ttggaattga tcttaatact gataacttct taaccgacag tggaggtaac
     6661 atagttccta atccacgata ttatcgcact attaaaggta aattagccaa agaacagcgc
     6721 attttatcta gacggcaaca acgtgcaaaa aaagaacatc gttccttacg cgatagtaaa
     6781 aattaccaaa agcaacgctt gctagttgcc aaacttcatg ccaaagtaat gaaccaaaga
     6841 cataattttc tccaacaaat ctctactgca ttaatcaaga accacgattt agtagtagcc
     6901 gaagagttgc gtagcaagaa tatgcttaaa aatcatgctt tagcacttag tatttctgac
     6961 gttggttggc gaacatttct tggcatgttg gcttataaag caaagcttta tgggcgtcaa
     7021 tttatcacaa tcaatccaag aaacaccacc caaacatgtt gcgattgtgg ctttgtgatg
     7081 ggcactaatg ggacggacaa actaacgtta gatgaccgaa aatggacttg tcctaactgt
     7141 ggtattcacc atattcgtga ctggaacgca gctaaaaata ttcttgataa gggaatagct
     7201 aaactagctt agcttatctg tccctatggc aacctgggga cataaaaggc gttggtaatt
     7261 agacgaccgc tgtttgatta caatttcggt tggtcaaata agttgtccct atctacgcaa
     7321 attgtggttc gaaatctgta aggattttcg gctcacaagc cactgacttt agtcagtggt
     7381 ggttgaccaa gcatcaattg tagcttgaga tcattgtagt ttttttaaac taatattttg
     7441 ttttgctgat cgcatttatt ctgcttctct cagtgacctt tcagttttca gcgcaaacta
     7501 tagcacaaca tccgtttttg tgtaaacaat ctcctaaaat aaatctccct taactttcag
     7561 taaatagcac tatgtttgta gtcatgttcc gaattacaac tcttaggaaa tagcggtgtc
     7621 ctaccttcat ctcaaagata gaacaccgct atttctacgc aactaaacgc aatttttgca
     7681 ctgtgttagt ttataaactc caatctgagc ctgatcaaga gaacaaaaag tgtcagcaat
     7741 atgaccagcg taaaggaaag tagcaacgca ccttgatctg ttgttggctt ttggagaaac
     7801 ttctgttgac tgaaacgttg gtaaaaatag atcaataacg ctcccacaaa gtttaaactc
     7861 aagagttgtt gtaccaaagc tagacttaaa aatagtggcc tatctgtcgc ttggatcttc
     7921 cataaggctg ctgctaataa taagttgagg cctgcaatga tcgttactaa ggctaagcta
     7981 ggcatcgtct gtaaagtcgc tggcaaactt ttgccaaggt caagcgcgac caaagataga
     8041 tatccaaata agatcacact tgaaccgatc cagtagccta ataagatctt cttgtataca
     8101 gctggtcttg ccagtacttg ttttaacatt tttctcacct atctttactc attttttcgg
     8161 tcaactttcg aaaaagataa tcaacgacaa ctgataatgt gactaatgac tcgacctttt
     8221 tttctttgat aacggaaaat ggcgtcacat gatagtgcaa agcataatcc gaatgactcg
     8281 caaacgtatt ctcctttgct tgcgtcacac tcacaagagg gacatttttc aaggtccaca
     8341 tgaagatgtt ttctttgatg ctttcagttt ctccactaag tgacgccaat aaaacaacat
     8401 cgtgtgtagt tatcatctcc attgccatat caagttcagt cttattaggg atcgtgatcg
     8461 cccgttttcc tagctgtaac agatttttag caaattcatc taagatccgc cgttgggaaa
     8521 aacctgtgcc gtagcaatag atcgtttggg cctctttgag ccgtaatgtt agatcgtccc
     8581 attcgacatg ttctaagcct ttgatcgtct taatgatatc tgagacctgt agatcggcaa
     8641 acatctctgt ggctggtttg acctctttag tgctcgtctt taaaaagtat ttgaattccg
     8701 agaaacctgc aaaacctaat tttctgacta aacgtaaaac tgttgatttg gaagtataag
     8761 ttgctgtagc taattcagtg atccccaact gttgaacttc ctgtttatta tctagcacat
     8821 aacgcaagat ggtcttatca agatctccta aggccttttg atgttttgtg atcaattctt
     8881 ctagtgtcat gtgcatcccc ctgatctgtc tactaatatg ctaaattata gcatatttcg
     8941 cacgatcaac taaagcgatt acactatctg agttctggcc agaaatctcg gttagcttcg
     9001 atcaagtcat ctaagatctg cttagcaact cttgcatttg gaatgatctt agaaagcgtt
     9061 agcgcttgcc atagtttttg ataggagtgt tcttcccaag cttcaacgac gagtttttcg
     9121 acagctactt gttgttccat caaacctttt tggaaacgcg ggatctggcc ttgaactaat
     9181 ggctcaggtc catttttccc tacgatacat gggacttcga ccattgccgt tggctcaaag
     9241 ttgctcaaag caccattatt ttccacgatc aacagcatac gttcgtgagt gttgtatgcg
     9301 atcgcccgtg ctagatccac gatatagctg gcatgctcgt caacttctaa actggtatct
     9361 ttggctgttt ttgcttggac gatcttttta cattcaccaa agacatgctt ttcgcgtccg
     9421 ttcataactt catttgcccg agtatactca gggtctgcat gctcaacttc atcttgtgaa
     9481 tagagatagt acttgagata cgtatttggt aaagtatctg gatctaccgc atagacttca
     9541 cgtgctttag caaaggtgtg catccagctt ggatcagtat gttgtgattc atgttctccg
     9601 agctcttctt tgagtgaata gccgtattta gctacatgtt ctttgatctg tggcatcaag
     9661 tcattgccag cgtgatctct gatatcggtc caccagccaa agtgattcaa gccatagtag
     9721 cgtacctcca tctctttgcg cgatttgagc ccgatcgcat gagccatccg ctcttcgatc
     9781 ccgactggca tgtcacaaat gttgatgatc ttagagttag gtcgtaactt acgtgttgct
     9841 tcagctacga tcgccgctgg attggaatag ttcaacatcc atgcatctgg tgaatattgt
     9901 tccatgtagt cgatcaactc taggacgcct ccgatcgaac gcatcccata agcgatcccc
     9961 cctggtccac aagtttcttg cccgataaca ccatatttaa gtgggatctt ttcatctttt
    10021 tcacgcatcg catatagtcc gacacgaata tgggccatga caaaatctac atcactaaag
    10081 gccgtctttg gatcagttgt cgcaacaaag tcgatctctg gtgccttttc ttttaaaatg
    10141 atctcacagg catctgcgat cactttttga cgtgcttcaa gattatcgta aaacttgatc
    10201 tgacggatcg gaaacttatc taaattctcc agtaacatca atacgatccc cggagtaaag
    10261 gtac
//
